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	1. 12802 Accesses	Research article Computer-assisted methods for molecular structure elucidation: realizing a spectroscopist's dream Mikhail Elyashberg, Kirill Blinov, Sergey Molodtsov, Yegor Smurnyy, Antony J Williams, Tatiana Churanova Journal of Cheminformatics 2009, 1:3 (17 March 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	2. 11156 Accesses	Review Molecular structure input on the web Peter Ertl Journal of Cheminformatics 2010, 2:1 (2 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Graphical abstract
	3. 10105 Accesses	Research article Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions Peter Ertl, Ansgar Schuffenhauer Journal of Cheminformatics 2009, 1:8 (10 June 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	4. 9627 Accesses	Research article Virtual screening of bioassay data Amanda C Schierz Journal of Cheminformatics 2009, 1:21 (22 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5. 7574 Accesses	Software Small Molecule Subgraph Detector (SMSD) toolkit Syed Rahman, Matthew Bashton, Gemma L Holliday, Rainer Schrader, Janet M Thornton Journal of Cheminformatics 2009, 1:12 (10 August 2009) Abstract \| Full text \| PDF \| PubMed
	6. 7384 Accesses	Preliminary communication Linked open drug data for pharmaceutical research and development Matthias Samwald, Anja Jentzsch, Christopher Bouton, Claus Kallesøe, Egon Willighagen, Janos Hajagos, M Marshall, Eric Prud'hommeaux, Oktie Hassanzadeh, Elgar Pichler, Susie Stephens Journal of Cheminformatics 2011, 3:19 (16 May 2011) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	7. 7273 Accesses	Research article Application of the PM6 semi-empirical method to modeling proteins enhances docking accuracy of AutoDock Zsolt Bikadi, Eszter Hazai Journal of Cheminformatics 2009, 1:15 (11 September 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	8. 6927 Accesses	Research article Optimal assignment methods for ligand-based virtual screening Andreas Jahn, Georg Hinselmann, Nikolas Fechner, Andreas Zell Journal of Cheminformatics 2009, 1:14 (25 August 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	9. 6131 Accesses	Research article Quantitative assessment of the expanding complementarity between public and commercial databases of bioactive compounds Christopher Southan, Péter Várkonyi, Sorel Muresan Journal of Cheminformatics 2009, 1:10 (6 July 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	10. 5778 Accesses	Research article Collaborative development of predictive toxicology applications Barry Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Kramer, Tobias Girschick, Fabian Buchwald, Joerg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir Poroikov, Dmitry Filimonov, Alexey Zakharov, Alexey Lagunin, Tatyana Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry Druzhilovsky, Sunil Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher et al. Journal of Cheminformatics 2010, 2:7 (31 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	11. 5720 Accesses	Research article Interpretable correlation descriptors for quantitative structure-activity relationships Benson M Spowage, Craig L Bruce, Jonathan D Hirst Journal of Cheminformatics 2009, 1:22 (24 December 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	12. 5373 Accesses	Commentary Chemistry publication – making the revolution Steven M Bachrach Journal of Cheminformatics 2009, 1:2 (17 March 2009) Abstract \| Full text \| PDF \| PubMed
	13. 5222 Accesses	Methodology Towards interoperable and reproducible QSAR analyses: Exchange of datasets Ola Spjuth, Egon L Willighagen, Rajarshi Guha, Martin Eklund, Jarl ES Wikberg Journal of Cheminformatics 2010, 2:5 (30 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	14. 5217 Accesses	Research article Software platform virtualization in chemistry research and university teaching Tobias Kind, Tim Leamy, Julie A Leary, Oliver Fiehn Journal of Cheminformatics 2009, 1:18 (16 November 2009) Abstract \| Full text \| PDF \| PubMed
	15. 5190 Accesses	Research article Combining docking with pharmacophore filtering for improved virtual screening Megan L Peach, Marc C Nicklaus Journal of Cheminformatics 2009, 1:6 (20 May 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	16. 5181 Accesses	Software MOLA: a bootable, self-configuring system for virtual screening using AutoDock4/Vina on computer clusters Rui MV Abreu, Hugo JC Froufe, Maria Queiroz, Isabel CFR Ferreira Journal of Cheminformatics 2010, 2:10 (28 October 2010) Abstract \| Full text \| PDF \| PubMed
	17. 5043 Accesses	Software The PubChem chemical structure sketcher Wolf D Ihlenfeldt, Evan E Bolton, Stephen H Bryant Journal of Cheminformatics 2009, 1:20 (17 December 2009) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	18. 4749 Accesses	Research article Basic primitives for molecular diagram sketching Alex M Clark Journal of Cheminformatics 2010, 2:8 (5 October 2010) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract
	19. 4510 Accesses	Software The Spectral Game: leveraging Open Data and crowdsourcing for education Jean-Claude Bradley, Robert J Lancashire, Andrew SID Lang, Antony J Williams Journal of Cheminformatics 2009, 1:9 (26 June 2009) Abstract \| Full text \| PDF \| PubMed
	20. 4435 Accesses	Software OrChem - An open source chemistry search engine for Oracle^® Mark Rijnbeek, Christoph Steinbeck Journal of Cheminformatics 2009, 1:17 (22 October 2009) Abstract \| Full text \| PDF \| PubMed
	21. 4343 Accesses	Research article Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining Kristina M Hettne, Antony J Williams, Erik M van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A Kors Journal of Cheminformatics 2010, 2:3 (23 March 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	22. 4006 Accesses	Editorial Grand challenges for cheminformatics David J Wild Journal of Cheminformatics 2009, 1:1 (17 March 2009) Abstract \| Full text \| PDF \| PubMed
	23. 3939 Accesses	Software Open Babel: An open chemical toolbox Noel M O'Boyle, Michael Banck, Craig A James, Chris Morley, Tim Vandermeersch, Geoffrey R Hutchison Journal of Cheminformatics 2011, 3:33 (7 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary \| Graphical abstract The first publication reporting the features, implementation and validation of the open source chemical toolbox - Open Babel - is described, which includes a summary of key advances in the 2.3 release
	24. 3704 Accesses	Software WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications Qian Zhu, Michael S Lajiness, Ying Ding, David J Wild Journal of Cheminformatics 2010, 2:6 (20 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Graphical abstract
	25. 3675 Accesses	Research article PubChem3D: Conformer generation Evan E Bolton, Sunghwan Kim, Stephen H Bryant Journal of Cheminformatics 2011, 3:4 (27 January 2011) Abstract \| Full text \| PDF \| PubMed \| Graphical abstract